Merge branch 'main' of gitea:jheuel/zoidberg

submitters/snakemake/zoidberg/grid-submit.py

@@ -4,12 +4,21 @@ import sys
 import requests
 from os import environ
 
+from snakemake.utils import read_job_properties
+
 jobscript = sys.argv[1]
+job_properties = read_job_properties(jobscript)
+
+payload = {
+    "cmd": jobscript
+}
+
+payload["threads"] = job_properties.get("threads", 1)
 
 resp = requests.post(
     "http://localhost:8080/submit",
     json=[
-        {"cmd": jobscript},
+        payload,
     ],
     headers={"cookie": environ["ZOIDBERG_SECRET"]},
 )