From 302e47c342619ec1e442e2171131c7a5d4722b37 Mon Sep 17 00:00:00 2001 From: Johannes Heuel Date: Thu, 8 Feb 2024 17:56:32 +0100 Subject: [PATCH] . --- submitters/snakemake/zoidberg/grid-submit.py | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/submitters/snakemake/zoidberg/grid-submit.py b/submitters/snakemake/zoidberg/grid-submit.py index 19da41c..61e80d8 100755 --- a/submitters/snakemake/zoidberg/grid-submit.py +++ b/submitters/snakemake/zoidberg/grid-submit.py @@ -4,12 +4,21 @@ import sys import requests from os import environ +from snakemake.utils import read_job_properties + jobscript = sys.argv[1] +job_properties = read_job_properties(jobscript) + +payload = { + "cmd": jobscript +} + +payload["threads"] = job_properties.get("threads", 1) resp = requests.post( "http://localhost:8080/submit", json=[ - {"cmd": jobscript}, + payload, ], headers={"cookie": environ["ZOIDBERG_SECRET"]}, )